Stem-loop aau-MIR319

Accession

MI0018982

Description

Acacia auriculiformis aau-MIR319 precursor miRNA

Literature search

1 open access papers mention aau-MIR319
(6 sentences)

Sequence

aacaguuuaagagagcuuccuucaguccacucauggaaggguaagggguuugaauuagcugcugacucauucauucaaacacaauagaacacagguuucuucaauacaggcuauugugaaugugugaaugaugcaggagguaaauuucauccuuuucuugucuuugcUUGGACUGAAGGGAGCUCCCUuucacuguu
((((((..(((.(((((((((((((((((..((.(((.(((.((((((..(((((((.((.(((..((((((((.((..((((((((.......(......)........))))))))..)).))))))))..))).)).)))..)))).))))))))).))).))..))))))))))))))))).)))..))))))

Structure

      uu   a                 cu  u   a   u      uu    --   g  g   ac        u  aa        -aacacag uu 
aacagu  aag gagcuuccuucagucca  ca gga ggg aagggg  ugaa  uua cu cug  ucauucau ca  cacaauag        g  u
||||||  ||| |||||||||||||||||  || ||| ||| ||||||  ||||  ||| || |||  |||||||| ||  ||||||||        |   
uuguca  uUC CUCGAGGGAAGUCAGGU  gu ucu uuc uuuucc  acuu  aau ga gac  aguaagug gu  guguuauc        c  c
      cu   C                 Uc  u   g   -      -u    ua   g  g   gu        u  aa        ggacauaa uu 

Annotation confidence Low

Genome context

Unknown

Mature aau-miR319

• Accession: MIMAT0022675
• Description: Acacia auriculiformis aau-miR319 mature miRNA
• Sequence: 168 - UUGGACUGAAGGGAGCUCCCU - 188
• Evidence: not_experimental

References

1. PubMed ID: 21729267
   Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing
   Wong MM, Cannon CH, Wickneswari R
   BMC Genomics (2011) 12:342