Stem-loop mtr-MIR482

Accession

MI0018337

Description

Medicago truncatula mtr-MIR482 precursor miRNA

Literature search

7 open access papers mention mtr-MIR482
(28 sentences)

Sequence

537194 reads, 3368.0 reads per million, 111 experiments

ggggaaggcaUAGGCAUGGGAUAGUAGGGAAgaagugauaacagcauaugcuuauuauggugcuucuucUUACCUACACCUCCCAUGCCUAcguuuucccucua
(((((((((.(((((((((((..(((((((((((((.((((.(((....)))..))))...))))))))...)))))...))))))))))).)))))))))...

Structure

---         a           -UA     ---        --g    -c   a 
   ggggaaggc UAGGCAUGGGA   GUAGG   GAAgaagu   auaa  agc u
   ||||||||| |||||||||||   |||||   ||||||||   ||||  |||  
   ucccuuuug AUCCGUACCCU   CAUCC   cuucuucg   uauu  ucg a
auc         c           CCA     AUU        ugg    au   u 

Annotation confidence High

Genome context

AC235678.1: 65790-65893 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR482

Mature mtr-miR482-5p

• Accession: MIMAT0021232
• Description: Medicago truncatula mtr-miR482-5p mature miRNA
• Sequence: 11 - UAGGCAUGGGAUAGUAGGGAA - 31
• Evidence: experimental ; Illumina [1-2]

Mature mtr-miR482-3p

• Accession: MIMAT0027102
• Description: Medicago truncatula mtr-miR482-3p mature miRNA
• Sequence: 70 - UUACCUACACCUCCCAUGCCUA - 91
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010


2. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105