miRBase entry: pma-mir-4567

Stem-loop pma-mir-4567


Accession
MI0017177
Description
Petromyzon marinus pma-mir-4567 precursor miRNA


Sequence


ggcgcccuacgugaccgugguggugagcagagggcccucaggcugagcuguacUAAUGCUGUCAUGAUUGGGGUAUaugaugu
...((((((((((((.(((.((((((((....((((....))))..))).))))).))).))))))..)))))).........

Structure
------ggc      --      c   g     -   agag    c 
         gcccua  cgugac gug uggug agc    ggcc u
         ||||||  |||||| ||| ||||| |||    ||||  
         UGGGGU  GUACUG CGU AUcau ucg    ucgg c
uguaguaUA      UA      U   A     g   --ag    a 


Annotation confidence Not enough data
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Genome context
ref|NC_046100.1|: 1735919-1736001 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pma-mir-4567
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pma-miR-4567-3p

Accession MIMAT0019599
Description Petromyzon marinus pma-miR-4567-3p mature miRNA
Sequence 54 - UAAUGCUGUCAUGAUUGGGGUAU - 76
Evidence experimental
454 [1]

References

  1. PubMed ID: 20959416
    microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
    "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
    "Proc Natl Acad Sci U S A (2010) 107:19379-19383