Stem-loop pma-let-7d

Accession

MI0017150

Description

Petromyzon marinus pma-let-7d precursor miRNA

Literature search

1 open access papers mention pma-let-7d
(5 sentences)

Sequence

ggugaggUGAGGUAGUAGGUUGUAAAGUUguagggugucauuuguuuacacccgauuuggagauaacuguacaaccuauugccuuc
........((((((((((((((((.((((((.((((((.........)))))).........)))))).)))))))))))))))).

Structure

ggugaggU                A      --------a      cau 
        GAGGUAGUAGGUUGUA AGUUgu         gggugu   u
        |||||||||||||||| ||||||         ||||||   u
        uuccguuauccaacau ucaaua         cccaca   g
-------c                g      gagguuuag      uuu 

Annotation confidence Not enough data

Genome context

ref|NC_046082.1|: 2081948-2082033 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pma-let-7d

Mature pma-let-7d-5p

• Accession: MIMAT0019568
• Description: Petromyzon marinus pma-let-7d-5p mature miRNA
• Sequence: 8 - UGAGGUAGUAGGUUGUAAAGUU - 29
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383