Stem-loop pma-mir-1788b

Accession

MI0017143

Description

Petromyzon marinus pma-mir-1788b precursor miRNA

Sequence

cuucccaucuccgccucaggcuugcuucagcugccugugugucaucgcugcgagccaCAGGCAAGGUAAAACAAGCCCGAggcaggugggugg
((.(((((((..(((((.((((((.((.(.(((((((((..((........))..))))))).)).).)).)))))).)))))))))))).))

Structure

  u       cc     a      c  c g  -       ug  auc 
cu cccaucu  gccuc ggcuug uu a cu gccugug  uc   g
|| |||||||  ||||| |||||| || | || |||||||  ||    
gg gggugga  cggAG CCGAAC AA U GA CGGACac  ag   c
  u       --     C      A  A G  A       cg  cgu 

Annotation confidence Not enough data

Genome context

GL484476.1: 286098-286190 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pma-mir-1788b

Mature pma-miR-1788b-3p

• Accession: MIMAT0019563
• Description: Petromyzon marinus pma-miR-1788b-3p mature miRNA
• Sequence: 58 - CAGGCAAGGUAAAACAAGCCCGA - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383