Stem-loop pma-mir-100a

Accession

MI0017052

Description

Petromyzon marinus pma-mir-100a precursor miRNA

Literature search

1 open access papers mention pma-mir-100a
(2 sentences)

Sequence

uccgccggucgccacaAACCCGUAGAUCCGAACUUGUGgugggaguuuugcACAAGCUCGUGUCUACGGGUCUgugucggcagggcacg
...(((.((((.((((.((((((((((.(((.((((((............)))))).))).)))))))))).)))).))))..)))...

Structure

ucc   -g    c    A          C   A      guggg 
   gcc  gucg caca ACCCGUAGAU CGA CUUGUG     a
   |||  |||| |||| |||||||||| ||| ||||||      
   cgg  cggc gugU UGGGCAUCUG GCU GAACAc     g
gca   ga    u    C          U   C      guuuu 

Annotation confidence Not enough data

Genome context

ref|NC_046100.1|: 8228211-8228299 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pma-mir-100a

Mature pma-miR-100a-5p

• Accession: MIMAT0019437
• Description: Petromyzon marinus pma-miR-100a-5p mature miRNA
• Sequence: 17 - AACCCGUAGAUCCGAACUUGUG - 38
• Evidence: experimental ; 454 [1]

Mature pma-miR-100a-3p

• Accession: MIMAT0019438
• Description: Petromyzon marinus pma-miR-100a-3p mature miRNA
• Sequence: 52 - ACAAGCUCGUGUCUACGGGUCU - 73
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383