Stem-loop pma-mir-29c

Accession

MI0017037

Description

Petromyzon marinus pma-mir-29c precursor miRNA

Sequence

ggagccuccuaccaggcugguuucacgugguggcuugaugugaaagugcgauucUAGCACCAUUUGAAAUCAGUGUuggugggcagagcacg
...(((((((((((.((((((((((.((((((.((.((..((......))..)).)))))))).))))))))))..))))))).)).))...

Structure

gga  -  -       -g          c      g  u  ug  aa 
   gc cu ccuacca  gcugguuuca guggug cu ga  ug  a
   || || |||||||  |||||||||| |||||| || ||  ||   
   cg ga ggguggu  UGACUAAAGU UACCAC GA cu  gc  g
gca  a  c       UG          U      -  U  ua  gu 

Annotation confidence Not enough data

Genome context

ref|NC_046082.1|: 14313104-14313195 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pma-mir-29c

Mature pma-miR-29c-3p

• Accession: MIMAT0019419
• Description: Petromyzon marinus pma-miR-29c-3p mature miRNA
• Sequence: 55 - UAGCACCAUUUGAAAUCAGUGU - 76
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383