Stem-loop hsa-mir-548aa-1

Accession

MI0016689

Symbol

HGNC: MIR548AA1

Description

Homo sapiens hsa-mir-548aa-1 precursor miRNA

Literature search

56 open access papers mention hsa-mir-548aa-1
(171 sentences)

Sequence

3537 reads, 36.0 reads per million, 140 experiments

cuuuauuagucuggUGCAAAAGAAACUGUGGUUUUUgccauuacuuuuacaggcAAAAACCACAAUUACUUUUGCAccaaccuaauauaacuuguuu
...((((((..(((((((((((.((.(((((((((((((............))))))))))))).)).)))))))))))..))))))..........

Structure

-------cuu      uc           A  C             auuac 
          uauuag  uggUGCAAAAG AA UGUGGUUUUUgcc     u
          ||||||  ||||||||||| || |||||||||||||      
          auaauc  accACGUUUUC UU ACACCAAAAAcgg     u
uuuguucaau      ca           A  A             acauu 

Annotation confidence Medium

Genome context

chr8: 123348034-123348130 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from hsa-mir-548aa-1

Mature hsa-miR-548aa-1-5p

• Accession: MIMAT0050605
• Description: Homo sapiens hsa-miR-548aa-1-5p mature miRNA
• Sequence: 15 - UGCAAAAGAAACUGUGGUUUUU - 36
• Evidence: experimental ; Illumina [1]

Mature hsa-miR-548aa-3p

• Accession: MIMAT0018447
• Description: Homo sapiens hsa-miR-548aa-3p mature miRNA
• Sequence: 55 - AAAAACCACAAUUACUUUUGCA - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20459774
   Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls
   Witten D, Tibshirani R, Gu SG, Fire A, Lui WO
   BMC Biol (2010) 8:58