Stem-loop gma-MIR169d

Accession

MI0016571

Description

Glycine max gma-MIR169d precursor miRNA

Literature search

23 open access papers mention gma-MIR169d
(106 sentences)

Sequence

77450 reads, 465.0 reads per million, 172 experiments

agauuaguggaugUGAGCCAAGGAUGACUUGCCGGuuguauaauagcaccCGGUUUAAGUCCUUCUUGGUUCUUauuuacuauucuua
(((.(((((((((.((((((((((.((((((((((.(((......))).)))))..))))).)))))))))).))))))))).)))..

Structure

--   u         U          U     --     u   au 
  aga uaguggaug GAGCCAAGGA GACUU  GCCGG ugu  a
  ||| ||||||||| |||||||||| |||||  ||||| |||   
  ucu aucauuuaU CUUGGUUCUU CUGAA  UGGCc acg  a
au   u         U          C     UU     c   au 

Annotation confidence High

Genome context

chr15: 14186946-14187033 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR169d

Mature gma-miR169d-5p

• Accession: MIMAT0018330
• Description: Glycine max gma-miR169d-5p mature miRNA
• Sequence: 14 - UGAGCCAAGGAUGACUUGCCGG - 35
• Evidence: experimental ; Illumina [1]

Mature gma-miR169d-3p

• Accession: MIMAT0054155
• Description: Glycine max gma-miR169d-3p mature miRNA
• Sequence: 51 - CGGUUUAAGUCCUUCUUGGUUCUU - 74
• Evidence: experimental ; unknown

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14