Stem-loop gma-MIR4402

Accession

MI0016561

Description

Glycine max gma-MIR4402 precursor miRNA

Sequence

5929 reads, 29.0 reads per million, 177 experiments

CGUUUGAGGCCCAUAAUAUGUUaaaaugcucaaaauuaaaugaggaauccccuaacaaauauccaaaggggauuuagucaacucauuuuuccaaaaauaggauuuaagauuuuugccaggggauuccucauuuaauuucgaaCAUUUUGACAUAUUAUGGGucucagacggacau
((((((((((((((((((((((((((((.((.(((((((((((((((((((((..((((.(((...((..(((...)))..))......(((.......))).....))).))))..))))))))))))))))))))).)).)))))))))))))))))))))))))))).....

Structure

-----                            c  a                     aa    u   ---------------------caa  gg   u 
     CGUUUGAGGCCCAUAAUAUGUUaaaaug uc aaauuaaaugaggaauccccu  caaa auc                        ag  gau  
     |||||||||||||||||||||||||||| || |||||||||||||||||||||  |||| |||                        ||  ||| u
     gcagacucuGGGUAUUAUACAGUUUUAC ag uuuaauuuacuccuuagggga  guuu uag                        uc  cug  
uacag                            a  c                     cc    u   aauuuaggauaaaaaccuuuuuac  aa   a 

Annotation confidence Low

Genome context

chr20: 44128634-44128808 [-]

Mature gma-miR4402-5p

• Accession: MIMAT0054146
• Description: Glycine max gma-miR4402-5p mature miRNA
• Sequence: 1 - CGUUUGAGGCCCAUAAUAUGUU - 22
• Evidence: experimental ; unknown

Mature gma-miR4402-3p

• Accession: MIMAT0018320
• Description: Glycine max gma-miR4402-3p mature miRNA
• Sequence: 143 - CAUUUUGACAUAUUAUGGG - 161
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14