Stem-loop gma-MIR4397

Accession

MI0016553

Description

Glycine max gma-MIR4397 precursor miRNA

Literature search

2 open access papers mention gma-MIR4397
(3 sentences)

Sequence

171645 reads, 631.0 reads per million, 173 experiments

uuuucuaguggucgccgCAUCGUUGACGCUGACUGUACGUacuucaucuccuucagaauucggaaggaugccauaaacaagccacauuaugguauagaaauuuuugggaguaaggguacgUCCCGUCAGUGUCAAAGAUGUGgcgaauacuagaaaa
.(((((((((.((((((((((.(((((((((((.(.((((((((...(((((..((((((.......(((((((((..........)))))))))...)))))).)))))...)))))))).).))))))))))).)))))))))).))))))))).

Structure

u         g          G           U U        cau     uc      cggaagg         acaa 
 uuucuagug ucgccgCAUC UUGACGCUGAC G ACGUacuu   cuccu  agaauu       augccauaa    g
 ||||||||| |||||||||| ||||||||||| | ||||||||   |||||  ||||||       |||||||||     
 aaagaucau agcgGUGUAG AACUGUGACUG C Ugcauggg   gaggg  uuuuaa       uaugguauu    c
a         a          A           C C        aau     -u      ----aga         acac 

Annotation confidence High

Genome context

chr4: 38550859-38551015 [-]

Mature gma-miR4397-5p

• Accession: MIMAT0020953
• Description: Glycine max gma-miR4397-5p mature miRNA
• Sequence: 18 - CAUCGUUGACGCUGACUGUACGU - 40
• Evidence: experimental ; Illumina [2]

Mature gma-miR4397-3p

• Accession: MIMAT0018312
• Description: Glycine max gma-miR4397-3p mature miRNA
• Sequence: 121 - UCCCGUCAGUGUCAAAGAUGUG - 142
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14


2. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307