Stem-loop gma-MIR4367

Accession

MI0016507

Description

Glycine max gma-MIR4367 precursor miRNA

Sequence

9997 reads, 47.0 reads per million, 178 experiments

caauuuccaucaaaacaauacuccccuaaaaccuagaacaaaauaugauauaauugauuuacuucACUAGGGUUCAGGACAAUAUUCaaucaugcuuggcucacugcaggacaaugcuagucauucucucacaugauugaauauuaucCUGAACCCUAGCGAAGUAAAUCaauuguaucauaucuuguucuagguuuuaggaaagcauugucuugauggaaauug
(((((((((((((.(((((.((..(((((((((((((((((.(((((((((((((((((((((((.(((((((((((((.((((((((((((((..(((((....(((......))).)))))........)))))))))))))).))))))))))))).))))))))))))))))))))))).)))))))))))))))))..)).))))).)))))))))))))

Structure

             a     a  cc                 a                       A             C              ------cu     cacu   gg 
caauuuccaucaa acaau cu  ccuaaaaccuagaacaa auaugauauaauugauuuacuuc CUAGGGUUCAGGA AAUAUUCaaucaug        uggcu    gca  a
||||||||||||| ||||| ||  ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||        |||||    |||   
guuaaagguaguu uguua ga  ggauuuuggaucuuguu uauacuauguuaaCUAAAUGAAG GAUCCCAAGUCcu uuauaaguuaguac        acuga    cgu  c
             c     c  aa                 c                       C             a              acucucuu     ---u   aa 

Annotation confidence Low

Genome context

chr1: 2417160-2417384 [+]

Mature gma-miR4367-5p

• Accession: MIMAT0054098
• Description: Glycine max gma-miR4367-5p mature miRNA
• Sequence: 66 - ACUAGGGUUCAGGACAAUAUUC - 87
• Evidence: experimental ; unknown

Mature gma-miR4367-3p

• Accession: MIMAT0018266
• Description: Glycine max gma-miR4367-3p mature miRNA
• Sequence: 149 - CUGAACCCUAGCGAAGUAAAUC - 170
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14