miRBase entry: gma-MIR4357

Stem-loop gma-MIR4357


Accession
MI0016490
Description
Glycine max gma-MIR4357 precursor miRNA

Literature search
1 open access papers mention gma-MIR4357
(1 sentences)

Sequence

6211 reads, 19.0 reads per million, 177 experiments
auuaacuguacaaaacacaugacuccucaauuaUUCUCAAAAUAAUUUUAAgucaucgcaccucaaagugauugaacucgucggguuuccacgguggaucccaucacaauacucgucgcacacuaauucgucguccuuaaaggguuuuaCAGUCGUGUGAUUGUACGGUUCAUag
...((((((((((..(((((((((....(((((((.....)))))))...(((((((((........)))).)).)))((.(((((......(((((...))))).....))))).))...............((((...))))......))))))))).)))))))))).....

Structure
--auu          aa         ---------------------------------------------------------------------------------------------------ccuc       C 
     aacuguacaa  cacaugacu                                                                                                       aauuaUU U
     ||||||||||  |||||||||                                                                                                       ||||||| C
     UUGGCAUGUU  GUGUGCUGA                                                                                                       UUAAUAA A
gaUAC          -A         CauuuugggaaauuccugcugcuuaaucacacgcugcucauaacacuacccuagguggcaccuuugggcugcucaaguuagugaaacuccacgcuacugAAUU       A 


Annotation confidence Low
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Genome context
chr16: 25716585-25716759 [-]

Database links

Mature gma-miR4357-5p

Accession MIMAT0054081
Description Glycine max gma-miR4357-5p mature miRNA
Sequence 34 - UUCUCAAAAUAAUUUUAA - 51
Evidence experimental
unknown

Mature gma-miR4357-3p

Accession MIMAT0018249
Description Glycine max gma-miR4357-3p mature miRNA
Sequence 150 - CAGUCGUGUGAUUGUACGGUUCAU - 173
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20122185
    Prediction of novel miRNAs and associated target genes in Glycine max
    Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
    BMC Bioinformatics (2010) 11:S14