Stem-loop gma-MIR4355

Accession

MI0016488

Description

Glycine max gma-MIR4355 precursor miRNA

Sequence

4551 reads, 32.0 reads per million, 163 experiments

cugguacacccagcauaacauguguaauuccaauuuugaccuuccauaaagcugauacaaauugauaauccgUAAGCUCAAUACGGAUUGgccaauccauuaucagcuuuacagaaaggcaaaaguggaauugCACUGUUGUGCUGGGUGUACCAgcaau
((((((((((((((((((((.(((((((((((.(((((.(((((..(((((((((((...((((.(((((((((.......)))))))))..))))....)))))))))))..).))))))))).)))))))))))))))))))))))))))))))....

Structure

----                    u           a     a    - ca           -caa    -a         AG 
    cugguacacccagcauaaca guguaauucca uuuug ccuu c  uaaagcugaua    auug  uaauccgUA  C
    |||||||||||||||||||| ||||||||||| ||||| |||| |  |||||||||||    ||||  |||||||||  U
    gACCAUGUGGGUCGUGUUGU CACguuaaggu aaaac ggaa g  auuucgacuau    uaac  GUUAGGCAU  C
uaac                    -           g     -    a ac           uacc    cg         AA 

Annotation confidence Low

Genome context

chr18: 1371151-1371310 [-]

Mature gma-miR4355-5p

• Accession: MIMAT0054079
• Description: Glycine max gma-miR4355-5p mature miRNA
• Sequence: 73 - UAAGCUCAAUACGGAUUG - 90
• Evidence: experimental ; unknown

Mature gma-miR4355-3p

• Accession: MIMAT0018247
• Description: Glycine max gma-miR4355-3p mature miRNA
• Sequence: 134 - CACUGUUGUGCUGGGUGUACCA - 155
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14