Stem-loop gma-MIR4348a

Accession

MI0016478

Description

Glycine max gma-MIR4348a precursor miRNA

Literature search

1 open access papers mention gma-MIR4348a
(1 sentences)

Sequence

auguguuAAACUUGUAAGAUGGUGACAUUaugaugguuaugaauguaaaaaugaccuucuauauuggaucaaguuacaaccaauguaaaaagugauuuacauccauaacUAUCACAAUGUCAUCAUCUUGcaaguuugauacaua
(((((((((((((((((((((((((((((.(((((((((((.((((((..((.((.((.((((((((............)))))))).)).)).)))))))).))))))))))).))))))))))))))))))))))))))))).

Structure

-                             a           a      aa  g  c  c        aucaa 
 auguguuAAACUUGUAAGAUGGUGACAUU ugaugguuaug auguaa  au ac uu uauauugg     g
 ||||||||||||||||||||||||||||| ||||||||||| ||||||  || || || ||||||||      
 uacauaguuugaacGUUCUACUACUGUAA ACUAUcaauac uacauu  ua ug aa auguaacc     u
a                             C           c      --  g  a  a        aacau 

Annotation confidence Low

Genome context

chr12: 37311016-37311160 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR4348a

Mature gma-miR4348a-5p

• Accession: MIMAT0018237
• Description: Glycine max gma-miR4348a-5p mature miRNA
• Sequence: 8 - AAACUUGUAAGAUGGUGACAUU - 29
• Evidence: experimental ; Illumina [1-2]

Mature gma-miR4348a-3p

• Accession: MIMAT0037389
• Description: Glycine max gma-miR4348a-3p mature miRNA
• Sequence: 110 - UAUCACAAUGUCAUCAUCUUG - 130
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153


3. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562