Stem-loop tgu-mir-460a

Accession

MI0013844

Description

Taeniopygia guttata tgu-mir-460a precursor miRNA

Sequence

cuuuauagcaCCUGCAUUGUACACACUGUGUguguggcuggaaaugCACAGCGCAUACAAUGUGGAUUcuguacaagucgcu
.............((.((((((((((..((((((((.(((........)))))))))))..))).....)))))))...)).

Structure

cuuuauagcaCCU  --A       -----   UG        g   gaa 
             GC   UUGUACA     CAC  UGUgugug cug   a
             ||   |||||||     |||  |||||||| |||    
             cg   aacaugu     GUG  ACAUACGC GAC   u
------------u  cug       cUUAG   UA        -   ACg 

Annotation confidence Not enough data

Genome context

chr2: 1092239-1092320 [-]

Mature tgu-miR-460a-5p

• Accession: MIMAT0014614
• Description: Taeniopygia guttata tgu-miR-460a-5p mature miRNA
• Sequence: 11 - CCUGCAUUGUACACACUGUGU - 31
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-460a-3p

• Accession: MIMAT0014658
• Description: Taeniopygia guttata tgu-miR-460a-3p mature miRNA
• Sequence: 47 - CACAGCGCAUACAAUGUGGAUU - 68
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727