Stem-loop tgu-mir-30d

Accession

MI0013843

Description

Taeniopygia guttata tgu-mir-30d precursor miRNA

Gene family

MIPF0000005; mir-30

Sequence

gcUGUAAACAUCCCCGACUGGAAGCUguaccugcuccagcUUUCAGUCAGAUGUUUGCUGCAccuggcuaug
((.(((((((((...((((((((((((.........)))))))))))).))))))))).))...........

Structure

-----------  U         CCC            uac 
           gc GUAAACAUC   GACUGGAAGCUg   c
           || |||||||||   ||||||||||||   u
           CG CGUUUGUAG   CUGACUUUcgac   g
guaucgguccA  U         --A            cuc 

Annotation confidence Not enough data

Genome context

chr2: 149540698-149540769 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from tgu-mir-30d

Mature tgu-miR-30d-5p

• Accession: MIMAT0014657
• Description: Taeniopygia guttata tgu-miR-30d-5p mature miRNA
• Sequence: 3 - UGUAAACAUCCCCGACUGGAAGCU - 26
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-30d-3p

• Accession: MIMAT0014613
• Description: Taeniopygia guttata tgu-miR-30d-3p mature miRNA
• Sequence: 41 - UUUCAGUCAGAUGUUUGCUGCA - 62
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727