Stem-loop tgu-mir-146c

Accession

MI0013839

Description

Taeniopygia guttata tgu-mir-146c precursor miRNA

Gene family

MIPF0000103; mir-146

Sequence

uucucagcuuUGAGAACUGAAUUCCAUGGGUUguaauugaaucugcugucagacccauggggcucaguucuu
...........(((((((((.(((((((((((.....(((........)))))))))))))).)))))))))

Structure

uucucagcuuU         A           guaau   auc 
           GAGAACUGA UUCCAUGGGUU     uga   u
           ||||||||| |||||||||||     |||    
           uucuugacu gggguacccag     acu   g
-----------         c           -----   guc 

Annotation confidence Not enough data

Genome context

chr13: 11635088-11635159 [+]

Mature tgu-miR-146c

• Accession: MIMAT0014609
• Description: Taeniopygia guttata tgu-miR-146c mature miRNA
• Sequence: 11 - UGAGAACUGAAUUCCAUGGGUU - 32
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727