Stem-loop tgu-mir-203

Accession

MI0013835

Description

Taeniopygia guttata tgu-mir-203 precursor miRNA

Gene family

MIPF0000108; mir-203

Sequence

gcgggcggggagcgcgcccccgccccgcugcgcuccccgcggacccucagccuccuuggugcAGUGGUUCUUAACAGUUCAACaguucucuagcauaauuGUGAAAUGUUUAGGACCACUUGaccagcgagg
....(((((((((((((.........)).)))))))))))..........((((.(((((..(((((((((.((((.((((.(((((.........))))))))).)))).)))))))))..))))).))))

Structure

gcgggcggggagcgcgcccccgccccgcugcgcuccccgcggacccucag    c     gc         U    G    A     cuc 
                                                  ccuc uuggu  AGUGGUUCU AACA UUCA Caguu   u
                                                  |||| |||||  ||||||||| |||| |||| |||||   a
                                                  ggag gacca  UCACCAGGA UUGU AAGU Guuaa   g
--------------------------------------------------    c     GU         U    A    -     uac 

Annotation confidence Not enough data

Genome context

chr5: 52214055-52214186 [+]

Mature tgu-miR-203-3p

• Accession: MIMAT0014605
• Description: Taeniopygia guttata tgu-miR-203-3p mature miRNA
• Sequence: 101 - GUGAAAUGUUUAGGACCACUUG - 122
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-203-5p

• Accession: MIMAT0027022
• Description: Taeniopygia guttata tgu-miR-203-5p mature miRNA
• Sequence: 63 - AGUGGUUCUUAACAGUUCAAC - 83
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727