Stem-loop tgu-mir-144

Accession

MI0013824

Description

Taeniopygia guttata tgu-mir-144 precursor miRNA

Literature search

1 open access papers mention tgu-mir-144
(1 sentences)

Sequence

gcaGGAUAUCAUCGUAUACUGUAAGUuggcuaugagacacUACAGUAUAGAUGAUGUACUccccgggcug
((.((((((((((.(((((((((.(((........)))..))))))))))))))))).....))..))..

Structure

--  -a  -----        G         -A   ggc 
  gc  GG     AUAUCAUC UAUACUGUA  GUu   u
  ||  ||     |||||||| |||||||||  |||    
  cg  cc     UGUAGUAG AUAUGACAU  cag   a
gu  gg  ccUCA        -         ca   agu 

Annotation confidence Not enough data

Genome context

chr19: 7265533-7265602 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-144

Mature tgu-miR-144-5p

• Accession: MIMAT0014650
• Description: Taeniopygia guttata tgu-miR-144-5p mature miRNA
• Sequence: 4 - GGAUAUCAUCGUAUACUGUAAGU - 26
• Evidence: experimental ; 454 [1], Illumina [2]

Mature tgu-miR-144-3p

• Accession: MIMAT0014596
• Description: Taeniopygia guttata tgu-miR-144-3p mature miRNA
• Sequence: 41 - UACAGUAUAGAUGAUGUACU - 60
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727