Stem-loop tgu-mir-1388

Accession

MI0013822

Description

Taeniopygia guttata tgu-mir-1388 precursor miRNA

Sequence

gccccagugaggggcaccucgAGGACUGUCUAACCUGAGAAUGgugaaacaucaaggucaAUCUCAGGUUCGUCAGCCCAUGagaugccuuc
(((((.....)))))..((((.((.(((.(.(((((((((.((((((....)))...))).))))))))).).))).)).))))........

Structure

gccccagugaggggcac    A  A   U U         A   ---   a 
                 cucg GG CUG C AACCUGAGA UGg   uga a
                 |||| || ||| | ||||||||| |||   |||  
                 gaGU CC GAC G UUGGACUCU acu   acu c
---------cuuccgua    A  C   U C         A   gga   a 

Annotation confidence Low

Genome context

chr20: 8822103-8822194 [-]

Mature tgu-miR-1388-3p

• Accession: MIMAT0014594
• Description: Taeniopygia guttata tgu-miR-1388-3p mature miRNA
• Sequence: 61 - AUCUCAGGUUCGUCAGCCCAUG - 82
• Evidence: experimental ; 454 [1], Illumina [2]

Mature tgu-miR-1388-5p

• Accession: MIMAT0027019
• Description: Taeniopygia guttata tgu-miR-1388-5p mature miRNA
• Sequence: 22 - AGGACUGUCUAACCUGAGAAUG - 43
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727