Stem-loop tgu-mir-190

Accession

MI0013817

Description

Taeniopygia guttata tgu-mir-190 precursor miRNA

Gene family

MIPF0000076; mir-190

Sequence

agacucugugUGAUAUGUUUGAUAUAUUAGGUuguuauuuaauccaACUAUAUAUCAAACAUAUUCCUacag
.....(((((.((((((((((((((((..(((((..........)))))))))))))))))))))..)))))

Structure

agacu     -U                UA     uuau 
     cugug  GAUAUGUUUGAUAUAU  GGUug    u
     |||||  ||||||||||||||||  |||||     
     gacaU  UUAUACAAACUAUAUA  UCAac    u
-----     CC                --     cuaa 

Annotation confidence Not enough data

Genome context

chr10: 3908501-3908572 [-]

Mature tgu-miR-190-5p

• Accession: MIMAT0014589
• Description: Taeniopygia guttata tgu-miR-190-5p mature miRNA
• Sequence: 11 - UGAUAUGUUUGAUAUAUUAGGU - 32
• Evidence: experimental ; 454 [1], Illumina [2]

Mature tgu-miR-190-3p

• Accession: MIMAT0027015
• Description: Taeniopygia guttata tgu-miR-190-3p mature miRNA
• Sequence: 47 - ACUAUAUAUCAAACAUAUUCCU - 68
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727