Stem-loop tgu-mir-193a

Accession

MI0013813

Description

Taeniopygia guttata tgu-mir-193a precursor miRNA

Gene family

MIPF0000082; mir-193

Sequence

aguCGGGGUUUUGGGGGCGAGAUGAgcuuauguuuuauccAACUGGCCCACAAAGUCCCGCUuuuggugguc
((.((((((((((.((((.((.(((((....))).....)).)).)))).))))))))))))..........

Structure

----------  u          G    G  A  -----   u 
          ag CGGGGUUUUG GGGC AG UG     Agc u
          || |||||||||| |||| || ||     |||  
          UC GCCCUGAAAC CCCG UC Ac     uug a
cuggugguuu  -          A    G  A  cuauu   u 

Annotation confidence Not enough data

Genome context

chr14: 6793220-6793291 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-193a

Mature tgu-miR-193a-3p

• Accession: MIMAT0014585
• Description: Taeniopygia guttata tgu-miR-193a-3p mature miRNA
• Sequence: 41 - AACUGGCCCACAAAGUCCCGCU - 62
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-193a-5p

• Accession: MIMAT0027014
• Description: Taeniopygia guttata tgu-miR-193a-5p mature miRNA
• Sequence: 4 - CGGGGUUUUGGGGGCGAGAUGA - 25
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727