Stem-loop tgu-mir-130c

Accession

MI0013808

Description

Taeniopygia guttata tgu-mir-130c precursor miRNA

Gene family

MIPF0000034; mir-130

Sequence

uccugcaccuccucugucccugaguggugucuguccaguGCCCUUUUUAUGUUGUACUACUggugaugaugcacaaaaagCAGUGCAAUGUUAAAAGGGCAUuggccagcaa
....(((((..(((.......))).)))))(((.(((((((((((((.((((((((((.((.(((......)))....)).)))))))))).))))))))))))).)))...

Structure

uccugcaccuccucugucccugaguggugu   u             U          A  ---g   au 
                              cug ccaguGCCCUUUU AUGUUGUACU CU    gug  g
                              ||| ||||||||||||| |||||||||| ||    |||   
                              gac gguUACGGGAAAA UGUAACGUGA ga    cac  a
---------------------------aac   c             U          C  aaaa   gu 

Annotation confidence Not enough data

Genome context

chr19: 8784984-8785095 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-130c

Mature tgu-miR-130c-3p

• Accession: MIMAT0014581
• Description: Taeniopygia guttata tgu-miR-130c-3p mature miRNA
• Sequence: 81 - CAGUGCAAUGUUAAAAGGGCAU - 102
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-130c-5p

• Accession: MIMAT0027012
• Description: Taeniopygia guttata tgu-miR-130c-5p mature miRNA
• Sequence: 40 - GCCCUUUUUAUGUUGUACUACU - 61
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727