Stem-loop tgu-mir-454

Accession

MI0013807

Description

Taeniopygia guttata tgu-mir-454 precursor miRNA

Gene family

MIPF0000174; mir-454

Sequence

gACCCUAUCAAUAUUGCCUCUGCUuuugugaucaggguagUAGUGCAAUAUUGCUUAUAGGGUcuuuucuuuu
((((((((((((((((((((((((((.(....)))))))).)).)))))))))...)))))))).........

Structure

---------        ---         -  -       u u 
         gACCCUAU   CAAUAUUGC CU CUGCUuu g g
         ||||||||   ||||||||| || ||||||| |  
         cUGGGAUA   GUUAUAACG GA gauggga c a
uuuucuuuu        UUC         U  U       - u 

Annotation confidence Not enough data

Genome context

chr15: 8486784-8486856 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from tgu-mir-454

Mature tgu-miR-454-3p

• Accession: MIMAT0014580
• Description: Taeniopygia guttata tgu-miR-454-3p mature miRNA
• Sequence: 41 - UAGUGCAAUAUUGCUUAUAGGGU - 63
• Evidence: experimental ; 454 [1], Illumina [2]

Mature tgu-miR-454-5p

• Accession: MIMAT0027011
• Description: Taeniopygia guttata tgu-miR-454-5p mature miRNA
• Sequence: 2 - ACCCUAUCAAUAUUGCCUCUGCU - 24
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727