Stem-loop tgu-mir-215

Accession

MI0013804

Description

Taeniopygia guttata tgu-mir-215 precursor miRNA

Gene family

MIPF0000063; mir-192

Sequence

guccaggaaaAUGACCUAUGAAUUGACAGACugucuuuugcauuugCCUGUCACUUCUAUAGGCCAAUauu
...........((.((((((((.((((((.(..............).)))))).))).))))).)).....

Structure

guccaggaaaA  A     -   U      A ugucuu 
           UG CCUAU GAA UGACAG C      u
           || ||||| ||| |||||| |       
           AC GGAUA CUU ACUGUC g      u
------uuaUA  C     U   C      C uuuacg 

Annotation confidence Not enough data

Genome context

chr3: 9653905-9653975 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-215

Mature tgu-miR-215-5p

• Accession: MIMAT0014577
• Description: Taeniopygia guttata tgu-miR-215-5p mature miRNA
• Sequence: 11 - AUGACCUAUGAAUUGACAGAC - 31
• Evidence: experimental ; 454 [1], Illumina [2]

Mature tgu-miR-215-3p

• Accession: MIMAT0027009
• Description: Taeniopygia guttata tgu-miR-215-3p mature miRNA
• Sequence: 47 - CCUGUCACUUCUAUAGGCCAAU - 68
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727