Stem-loop tgu-mir-92-2

Accession

MI0013801

Description

Taeniopygia guttata tgu-mir-92-2 precursor miRNA

Gene family

MIPF0000013; mir-25

Literature search

3 open access papers mention tgu-mir-92-2
(9 sentences)

Sequence

ccuugcacugauuucuccauggGUGGGGAUUUGUUGCAUUACUUguagcuguauguagagUAUUGCACUUGUCCCGGCCUGUggaggaaagg
...........(((((((((((((.(((((..((.(((.(((((...((.....)).))))).)))))..))))).)))))))))))))...

Structure

ccuugcacuga             G     UU  U   U     gua  u 
           uuucuccauggGU GGGAU  GU GCA UACUU   gc g
           ||||||||||||| |||||  || ||| |||||   || u
           aaggaggUGUCCG CCCUG  CA CGU AUgag   ug a
--------gga             G     UU  -   U     --a  u 

Annotation confidence Not enough data

Genome context

chr4A: 7274404-7274495 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from tgu-mir-92-2

Mature tgu-miR-92-3p

• Accession: MIMAT0014574
• Description: Taeniopygia guttata tgu-miR-92-3p mature miRNA
• Sequence: 61 - UAUUGCACUUGUCCCGGCCUGU - 82
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-92-2-5p

• Accession: MIMAT0031032
• Description: Taeniopygia guttata tgu-miR-92-2-5p mature miRNA
• Sequence: 23 - GUGGGGAUUUGUUGCAUUACUU - 44
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727