Stem-loop tgu-mir-153-1

Accession

MI0013768

Description

Taeniopygia guttata tgu-mir-153-1 precursor miRNA

Gene family

MIPF0000050; mir-153

Literature search

1 open access papers mention tgu-mir-153-1
(1 sentences)

Sequence

uGUCAUUUUUGUGAUGUUGCAGCUaguaauaugagcccagUUGCAUAGUCACAAAAGUGAUCauuggaaacu
.((((((((((((((..(((((((.((.......))..)))))))..))))))))))))))...........

Structure

----------u              GU       -a  aa 
           GUCAUUUUUGUGAU  UGCAGCU  gu  u
           ||||||||||||||  |||||||  ||  a
           UAGUGAAAACACUG  ACGUUga  cg  u
ucaaagguuaC              AU       cc  ag 

Annotation confidence Not enough data

Genome context

chr2: 9797628-9797699 [-]

Mature tgu-miR-153-3p

• Accession: MIMAT0014552
• Description: Taeniopygia guttata tgu-miR-153-3p mature miRNA
• Sequence: 41 - UUGCAUAGUCACAAAAGUGAUC - 62
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-153-1-5p

• Accession: MIMAT0026997
• Description: Taeniopygia guttata tgu-miR-153-1-5p mature miRNA
• Sequence: 2 - GUCAUUUUUGUGAUGUUGCAGCU - 24
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727