Stem-loop tgu-mir-126

Accession

MI0013758

Description

Taeniopygia guttata tgu-mir-126 precursor miRNA

Gene family

MIPF0000115; mir-126

Sequence

auccucguuccugcagggcgggucuggagccacgaggagcggcgggcgccgcuggugacggccCAUUAUUACUUUUGGUACGCgcugugacacuucaaacUCGUACCGUGAGUAAUAAUGCGcuguggccag
.(((((((..((.((((.....)))).))..)))))))(((((....)))))((((.(((((.(((((((((((.(((((((.....(((....)))....))))))).))))))))))).))))).)))).

Structure

auccucguuccugcagggcgggucuggagccacgaggagcggcgggcgccgc    g     c           U       Cgcug   c 
                                                    uggu acggc CAUUAUUACUU UGGUACG     uga a
                                                    |||| ||||| ||||||||||| |||||||     |||  
                                                    accg ugucG GUAAUAAUGAG GCCAUGC     acu c
---------------------------------------------------g    g     C           U       -Ucaa   u 

Annotation confidence Not enough data

Genome context

chr17: 8833549-8833680 [-]

Mature tgu-miR-126-5p

• Accession: MIMAT0014639
• Description: Taeniopygia guttata tgu-miR-126-5p mature miRNA
• Sequence: 64 - CAUUAUUACUUUUGGUACGC - 83
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-126-3p

• Accession: MIMAT0014544
• Description: Taeniopygia guttata tgu-miR-126-3p mature miRNA
• Sequence: 101 - UCGUACCGUGAGUAAUAAUGCG - 122
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727