Stem-loop tgu-mir-138-1

Accession

MI0013715

Description

Taeniopygia guttata tgu-mir-138-1 precursor miRNA

Gene family

MIPF0000075; mir-138

Sequence

gcugugcaacAGCUGGUGUUGUGAAUCAGGCCGucaccagucggagaacgGCUACUUCACAACACCAGGGUcg
............(((((((((((((...(((((((.((....)).).))))))..))))))))))))).....

Structure

gcugugcaacAG             UCA      - a  a 
            CUGGUGUUGUGAA   GGCCGu c cc g
            |||||||||||||   |||||| | ||  
            GACCACAACACUU   UCGgca g gg u
-------gcUGG             -CA      a a  c 

Annotation confidence Not enough data

Genome context

chr2: 61107967-61108039 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-138-1

Mature tgu-miR-138-5p

• Accession: MIMAT0014515
• Description: Taeniopygia guttata tgu-miR-138-5p mature miRNA
• Sequence: 11 - AGCUGGUGUUGUGAAUCAGGCCG - 33
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-138-1-3p

• Accession: MIMAT0026979
• Description: Taeniopygia guttata tgu-miR-138-1-3p mature miRNA
• Sequence: 51 - GCUACUUCACAACACCAGGGU - 71
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727