Stem-loop tgu-mir-221

Accession

MI0013710

Description

Taeniopygia guttata tgu-mir-221 precursor miRNA

Gene family

MIPF0000051; mir-221

Sequence

ACCUGGCAUACAAUGUAGAUUUCUGUguuuguuaagcaacAGCUACAUUGUCUGCUGGGUUUCcagcugccug
((((((((.(((((((((....((((((((...)))).))))))))))))).)))))))).............

Structure

-------------        U         AUUU    -    g 
             ACCUGGCA ACAAUGUAG    CUGU guuu  
             |||||||| |||||||||    |||| |||| u
             UGGGUCGU UGUUACAUC    GAca cgaa  
guccgucgacCUU        C         ----    a    u 

Annotation confidence Not enough data

Genome context

chr1: 5261236-5261308 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-221

Mature tgu-miR-221-3p

• Accession: MIMAT0014512
• Description: Taeniopygia guttata tgu-miR-221-3p mature miRNA
• Sequence: 41 - AGCUACAUUGUCUGCUGGGUUUC - 63
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-221-5p

• Accession: MIMAT0026976
• Description: Taeniopygia guttata tgu-miR-221-5p mature miRNA
• Sequence: 1 - ACCUGGCAUACAAUGUAGAUUUCUGU - 26
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727