Stem-loop tgu-mir-2984

Accession

MI0013682

Description

Taeniopygia guttata tgu-mir-2984 precursor miRNA

Literature search

1 open access papers mention tgu-mir-2984
(2 sentences)

Sequence

ugcuucaccugcggAGCCUGCUGAGAGUGAAAUUGauaaaggacagcaccagcccaggcAAUUUCACUCACAGCGGGCACUUgcaggugaagca
((((((((((((((.((((((((.(((((((((((.....((...((....))))...))))))))))).))))))))..))))))))))))))

Structure

              -A        A           auaaa  aca  a 
ugcuucaccugcgg  GCCUGCUG GAGUGAAAUUG     gg   gc c
||||||||||||||  |||||||| |||||||||||     ||   ||  
acgaaguggacgUU  CGGGCGAC CUCACUUUAAc     cc   cg c
              CA        A           --gga  ---  a 

Annotation confidence Not enough data

Genome context

chr1: 39743243-39743336 [-]

Mature tgu-miR-2984-5p

• Accession: MIMAT0014494
• Description: Taeniopygia guttata tgu-miR-2984-5p mature miRNA
• Sequence: 15 - AGCCUGCUGAGAGUGAAAUUG - 35
• Evidence: experimental ; Illumina [1-2]

Mature tgu-miR-2984-3p

• Accession: MIMAT0026970
• Description: Taeniopygia guttata tgu-miR-2984-3p mature miRNA
• Sequence: 60 - AAUUUCACUCACAGCGGGCACUU - 82
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727