Stem-loop tgu-mir-2971

Accession

MI0013667

Description

Taeniopygia guttata tgu-mir-2971 precursor miRNA

Sequence

gccugcuugcuguuaUAAAGCCUGUAGGAUUGGGUCGUguuggauauuuaacuucucuucccucgaucugcaucucacuggcuugaaaucagccuggcagc
..(((((.((((.....(((((.((.(((((((((((....(((..............)))..))))))).)))).)).))))).....))))..))))).

Structure

gc     -u    uuaUA     U  A    -       Uguu   uauuua 
  cugcu  gcug     AAGCC GU GGAU UGGGUCG    gga      a
  |||||  ||||     ||||| || |||| |||||||    |||       
  gacgg  cgac     uucgg ca ucua gucuagc    ccu      c
-c     uc    uaaag     u  c    c       --uc   ucucuu 

Annotation confidence Not enough data

Genome context

chr12: 2419453-2419553 [-]

Mature tgu-miR-2971

• Accession: MIMAT0014481
• Description: Taeniopygia guttata tgu-miR-2971 mature miRNA
• Sequence: 16 - UAAAGCCUGUAGGAUUGGGUCGU - 38
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727