Stem-loop tgu-mir-2954

Accession

MI0013660

Description

Taeniopygia guttata tgu-mir-2954 precursor miRNA

Gene family

MIPF0001032; mir-2954

Literature search

3 open access papers mention tgu-mir-2954
(147 sentences)

Sequence

ggagcaguGCUGAGAGGGCUUGGGGAGAGGAuuguaguggagcucCAUCCCCAUUCCACUCCUAGCAGcucu
(((((..(((((.(((((..((((((..(((..((......))))).))))))..)).))).))))))))))

Structure

     ag     A   -  CU      GA   uu  ag 
ggagc  uGCUG GAG GG  UGGGGA  GGA  gu  u
|||||  ||||| ||| ||  ||||||  |||  ||   
ucucG  ACGAU CUC CC  ACCCCU  Ccu  cg  g
     --     C   A  UU      -A   --  ag 

Annotation confidence Not enough data

Genome context

chrZ: 31606464-31606535 [+]

Mature tgu-miR-2954-5p

• Accession: MIMAT0014623
• Description: Taeniopygia guttata tgu-miR-2954-5p mature miRNA
• Sequence: 9 - GCUGAGAGGGCUUGGGGAGAGGA - 31
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-2954-3p

• Accession: MIMAT0014474
• Description: Taeniopygia guttata tgu-miR-2954-3p mature miRNA
• Sequence: 46 - CAUCCCCAUUCCACUCCUAGCAG - 68
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727