Stem-loop tgu-mir-1729

Accession

MI0013654

Description

Taeniopygia guttata tgu-mir-1729 precursor miRNA

Sequence

gguagacaggccugauccugcAUCCCUUACUCACGUGAGCAGUCgucucuaugucaaagggaCUACUCGGUGAGUAAGGAUCGCaggauugggaccacuacc
(((((...(((((((((((((((((.((((((((.((((.((((.(((.........))))))).)))))))))))))))).))))))))))).)).)))))

Structure

     aca  -           -    C        G    C    g   cua 
gguag   gg ccugauccugc AUCC UUACUCAC UGAG AGUC ucu   u
|||||   || ||||||||||| |||| |||||||| |||| |||| |||   g
ccauc   cc ggguuaggaCG UAGG AAUGAGUG GCUC UCag gga   u
     --a  a           C    -        -    A    -   aac 

Annotation confidence Low

Genome context

chr15: 8049890-8049991 [-]

Mature tgu-miR-1729-5p

• Accession: MIMAT0014467
• Description: Taeniopygia guttata tgu-miR-1729-5p mature miRNA
• Sequence: 22 - AUCCCUUACUCACGUGAGCAGUC - 44
• Evidence: experimental ; Illumina [1-2]

Mature tgu-miR-1729-3p

• Accession: MIMAT0026963
• Description: Taeniopygia guttata tgu-miR-1729-3p mature miRNA
• Sequence: 63 - CUACUCGGUGAGUAAGGAUCGC - 84
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727