Stem-loop tgu-mir-219b

Accession

MI0013651

Description

Taeniopygia guttata tgu-mir-219b precursor miRNA

Gene family

MIPF0000044; mir-219

Literature search

1 open access papers mention tgu-mir-219b
(1 sentences)

Sequence

ccccgagaaccguccuggagccccgccggaggaggugaaaccucugcuacagauguccagacacaauucuugguucguacggcuccaucgCACAAGAAUUGCGUUUGGACAaucaggagcggagauucccaucccgggcucgcgggaucuuccagggg
((((..(((..((((((((((((....((.((.((.(((..(((((((...(((((((((((.(((((((((...((...........))..))))))))).)))))))).)))...))))))).))))).)))))))))).)))))).)))..))))

Structure

    ga   cc      -      cgcc  a  a  u   ac       aca   -        a         guu  uacg 
cccc  gaa  guccug gagccc    gg gg gg gaa  cucugcu   gau guccagac caauucuug   cg    g
||||  |||  |||||| ||||||    || || || |||  |||||||   ||| |||||||| |||||||||   ||    c
gggg  cuu  uagggc cucggg    cc cu cc cuu  gaggcga   cua CAGGUUUG GUUAAGAAC   gc    u
    ac   -c      g      ----  -  a  -   -a       gga   A        C         -AC  uacc 

Annotation confidence Not enough data

Genome context

chr17: 5454921-5455078 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-219b

Mature tgu-miR-219b

• Accession: MIMAT0014464
• Description: Taeniopygia guttata tgu-miR-219b mature miRNA
• Sequence: 91 - CACAAGAAUUGCGUUUGGACA - 111
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727