Stem-loop tgu-mir-1662

Accession

MI0013646

Description

Taeniopygia guttata tgu-mir-1662 precursor miRNA

Gene family

MIPF0000918; mir-1662

Sequence

ugggcUUGACAUCAUCAUACUUGGGAUguaugacacgaagucccaagcaggcugaugucaggccca
((((((((((((((.(...((((((((............))))))))...).))))))))))))))

Structure

              U AUA        guaug 
ugggcUUGACAUCA C   CUUGGGAU     a
|||||||||||||| |   ||||||||      
acccggacuguagu g   gaacccug     c
              c gac        aagca 

Annotation confidence Not enough data

Genome context

chr2: 2943947-2944012 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-1662

Mature tgu-miR-1662

• Accession: MIMAT0014459
• Description: Taeniopygia guttata tgu-miR-1662 mature miRNA
• Sequence: 6 - UUGACAUCAUCAUACUUGGGAU - 27
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727