Stem-loop tgu-mir-1677

Accession

MI0013638

Description

Taeniopygia guttata tgu-mir-1677 precursor miRNA

Gene family

MIPF0000849; mir-1677

Sequence

uagggucugaUCCUGCACCGCUGAAGUCAauggaagcuuugucaUUGACUUCAAUAGGAGCAGGAUUugaaccuua
(((((((.((((((((.((..((((((((((((........))))))))))))...)).)))))))).).))))))

Structure

      - u        A  -GC            aag 
uagggu c gaUCCUGC CC   UGAAGUCAaugg   c
|||||| | |||||||| ||   ||||||||||||    
auucca g UUAGGACG GG   ACUUCAGUUacu   u
      a u        A  AUA            guu 

Annotation confidence Not enough data

Genome context

chr3: 76231058-76231133 [+]

Mature tgu-miR-1677-5p

• Accession: MIMAT0014452
• Description: Taeniopygia guttata tgu-miR-1677-5p mature miRNA
• Sequence: 11 - UCCUGCACCGCUGAAGUCA - 29
• Evidence: experimental ; Illumina [1-2]

Mature tgu-miR-1677-3p

• Accession: MIMAT0026959
• Description: Taeniopygia guttata tgu-miR-1677-3p mature miRNA
• Sequence: 45 - UUGACUUCAAUAGGAGCAGGAUU - 67
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727