Stem-loop tgu-mir-1329

Accession

MI0013635

Description

Taeniopygia guttata tgu-mir-1329 precursor miRNA

Sequence

ucugguuguagagaUACAGUGAUCAGGUUACGAUGGAuuucucaaguaacaaCCUCGUAGCUUGAUCACGAUAucccuaugacuuga
((.((((((((.((((..(((((((((((((((.((................)))))))))))))))))..)))).)))))))).))

Structure

  u        a    CA               U  Auuucuc 
uc gguuguag gaUA  GUGAUCAGGUUACGA GG       a
|| |||||||| ||||  ||||||||||||||| ||        
ag ucaguauc cuAU  CACUAGUUCGAUGCU CC       a
  u        c    AG               -  aacaaug 

Annotation confidence Low

Genome context

chr3: 99620780-99620866 [+]

Mature tgu-miR-1329-5p

• Accession: MIMAT0014449
• Description: Taeniopygia guttata tgu-miR-1329-5p mature miRNA
• Sequence: 15 - UACAGUGAUCAGGUUACGAUGGA - 37
• Evidence: experimental ; Illumina [1-2]

Mature tgu-miR-1329-3p

• Accession: MIMAT0026956
• Description: Taeniopygia guttata tgu-miR-1329-3p mature miRNA
• Sequence: 53 - CCUCGUAGCUUGAUCACGAUA - 73
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727