Stem-loop osa-MIR2879

Accession

MI0013045

Description

Oryza sativa osa-MIR2879 precursor miRNA

Literature search

2 open access papers mention osa-MIR2879
(2 sentences)

Sequence

4789 reads, 25.0 reads per million, 137 experiments

ugcccagacgcgcucuggUCAUUAUUCUAACAUAUCCGGaucaacuggagagagaauuuuuagaaaggauguuugugcacuuguucaaccuguuuaacaaucacaaucagaucacaaaagauuauacugacacuaaauucaucugaucuaguacuuuauuuuuccgcauaaugccucuuguuuugacuacuugaucauuuuuagauguuugucaauggauggcacgaggguaaaagcgccauuuauaaaauuuaaucucuccaauugaGCCAGAUGUGUUAAAAUAAUGACCauaguaugu
.......(((.(((.(((((((((((.(((((((((.((.((((.(((((((((((((((..(((.((.(((((.(((.((((((((.((...................((((......))))..((.(((((((((......(((((.((((.((.........(((...)))..........)).)))).)))))..))))).)))).))....)).))).))))).))).))))))).)))..)))))))..)))))))).)))).)).))))))))).))))))))))).))).)))

Structure

ugcccag   c   c           C         C  a    c        --       ua   a  a     g   a     -   a  uguuuaacaaucacaaucagaucacaaaagauuau  u    -     uucauc     u    c  -uauuuuucc   u 
       acg gcu uggUCAUUAUU UAACAUAUC GG ucaa uggagaga  gaauuuu  gaa gg uguuu ugc cuugu uca cc                                   ac gaca cuaaa      ugauc agua uu          gca  
       ||| ||| ||||||||||| ||||||||| || |||| ||||||||  |||||||  ||| || ||||| ||| ||||| ||| ||                                   || |||| |||||      ||||| |||| ||          ||| a
       ugu uga aCCAGUAAUAA AUUGUGUAG CC aguu accucucu  uuuaaaa  uuu cc gcgaa aug gagca ggu gg                                   ug uugu gauuu      acuag ucau ag          cgu  
-------   a   u           A         A  G    a        aa       ua   a  -     a   g     c   a  -------------------------------uaac  u    a     ----uu     u    c  uuuuguucuc   a 

Annotation confidence High

Genome context

2: 18895908-18896208 [-]

Mature osa-miR2879-5p

• Accession: MIMAT0056146
• Description: Oryza sativa osa-miR2879-5p mature miRNA
• Sequence: 19 - UCAUUAUUCUAACAUAUCCGG - 39
• Evidence: experimental ; unknown

Mature osa-miR2879-3p

• Accession: MIMAT0013831
• Description: Oryza sativa osa-miR2879-3p mature miRNA
• Sequence: 269 - GCCAGAUGUGUUAAAAUAAUGACC - 292
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435