Stem-loop osa-MIR2877

Accession

MI0013042

Description

Oryza sativa osa-MIR2877 precursor miRNA

Literature search

2 open access papers mention osa-MIR2877
(2 sentences)

Sequence

64770 reads, 232.0 reads per million, 142 experiments

aaucuugguuuaauguaucauccgauGUCCAAAGUGCAGAUGACGCAGCUugggugcugauguggcaauccacgguggugagaauuuugcauuuagcccccucaugcuacaguaugccuucaagucuacucccaccacucccaaaucuuuuggugcauggcuuaaacuaugaauuugcuggaugcugagaaaugcauauuuguugauuuggggugguaggagucgauuucggggcauacuauagugaagaggcguaagugcaaaauucucgucacuguggacaagccugagUUGCAUCCUCUGCACUUUGGGCCUcgagugauacauuaaaccaagauuaaggguguuuuuuagagggaaa
(((((((((((((((((((((.(((.((((((((((((((.((.((((((((((((((.....)))..((((((((((((((((((((((((((((((.(.((..((((.((((((((((.(((((.(((((.(((((.((((((((.....((((((..((((............((.....))))))..)))))).......))))))))))))).))))).))))).)))))))))).)))))).).))).)))))))))))))))))))))))))))...))))))))))).)).)))))))))))))).))).)))))))))))))))))))))......................

Structure

----------------------                     c   u              U  C           gcugauguggcaa                           -   c c  au    c          c     u     c     u        --uuuug      gg    aacuaugaauuu  u 
                      aaucuugguuuaauguaucau cga GUCCAAAGUGCAGA GA GCAGCUugggu             uccacgguggugagaauuuugcauuua gcc c uc  gcua aguaugccuu aaguc acucc accac cccaaauc       gugcau  cuua            gc g
                      ||||||||||||||||||||| ||| |||||||||||||| || |||||||||||             ||||||||||||||||||||||||||| ||| | ||  |||| |||||||||| ||||| ||||| ||||| ||||||||       ||||||  ||||            || g
                      uuagaaccaaauuacauagug gcU CGGGUUUCACGUCU CU CGUUgaguccg             aggugucacugcucuuaaaacgugaau cgg g ag  ugau ucauacgggg uuuag ugagg uggug ggguuuag       uacgua  gagu            cg a
aaagggagauuuuuugugggaa                     a   C              C  A           ----------aac                           g   a a  --    a          c     c     a     -        uuguuua      aa    ------------  u 

Annotation confidence High

Genome context

4: 28585208-28585568 [-]

Mature osa-miR2877-5p

• Accession: MIMAT0056144
• Description: Oryza sativa osa-miR2877-5p mature miRNA
• Sequence: 27 - GUCCAAAGUGCAGAUGACGCAGCU - 50
• Evidence: experimental ; unknown

Mature osa-miR2877-3p

• Accession: MIMAT0013827
• Description: Oryza sativa osa-miR2877-3p mature miRNA
• Sequence: 292 - UUGCAUCCUCUGCACUUUGGGCCU - 315
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435