Accession
MI0013037
Description
Oryza sativa
osa-MIR2872 precursor miRNA
Literature search
2 open access papers mention osa-MIR2872
(2 sentences)
(2 sentences)
Sequence
11095
reads,
77.0
reads per million, 142 experiments
cuuagauuauuucauAGUUCGGUUUGUAGAAUACCAucuucgaguucuugauuaaucacucaucugcaauugauggcaacaggaugcucgaucuuccaucagguaaagauaacucuugauuuggcgaaaacuugucacacaugauuugacuuucgaucaacacgaucuaaacuugcaauuucagcaccaugucuuuucuaguuaccaaccgugccgaaaucugauuggccuucacugagaaggcuaauccuugcaugcgaaucgaagaauacaagcaagaaaaagguagauuguagcucaauugcagaugaaugauuuagcacucgaaguUGGGGUUCUACAAACCGAACUaguggugaa
......(((((.(.((((((((((((((((((.(((.((((((((.((.....(((((.((((((((((((((............(((((((((.((((((((...........)))))).((((((....)))))).....((........))((((.....))))..........(((((.((((.......................)))).)))))..(((((((((((.....)))))))))))(((((.((..............)).))))).....)).)))))).))))))))))))))))).))))).)).)))))))).))).))))))))))))))))))).))))).
......(((((.(.((((((((((((((((((.(((.((((((((.((.....(((((.((((((((((((((............(((((((((.((((((((...........)))))).((((((....)))))).....((........))((((.....))))..........(((((.((((.......................)))).)))))..(((((((((((.....)))))))))))(((((.((..............)).))))).....)).)))))).))))))))))))))))).))))).)).)))))))).))).))))))))))))))))))).))))).
Structure
cuuaga u a A u u ugauu c uggcaacaggau - u aucagguaaagauaacucuugauuuggcgaaaacuugucacacaugauuugacuuucgaucaacacgaucuaaacuugcaauuucagcaccaugucuuuucuaguuaccaaccgugccgaaaucu a
uuauu c uAGUUCGGUUUGUAGAAU CCA cuucgagu cu aauca ucaucugcaauuga gcu cgaucu cc gauuggccuuc c
||||| | |||||||||||||||||| ||| |||||||| || ||||| |||||||||||||| ||| |||||| || ||||||||||| u
agugg g aUCAAGCCAAACAUCUUG GGU gaagcuca ga uuagu aguagacguuaacu cga guuaga gg cuaaucggaag g
-----a u - G u c ----u a ------------ u u ------------------------------------------------------------------------------------------aaaaagaacgaacauaagaagcuaagcguacguuc a
Annotation confidence
High
Do you think this miRNA is real?
Genome context
11: 2524994-2525353 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR2872
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature osa-miR2872-5p
| Accession | MIMAT0056141 |
| Description | Oryza sativa osa-miR2872-5p mature miRNA |
| Sequence | 16 - AGUUCGGUUUGUAGAAUACCA - 36 |
| Evidence |
experimental
unknown |
Mature osa-miR2872-3p
| Accession | MIMAT0013822 |
| Description | Oryza sativa osa-miR2872-3p mature miRNA |
| Sequence | 331 - UGGGGUUCUACAAACCGAACU - 351 |
| Evidence |
experimental
Illumina [1] |
References
|
