Stem-loop osa-MIR2870

Accession

MI0013032

Description

Oryza sativa osa-MIR2870 precursor miRNA

Sequence

7314 reads, 28.0 reads per million, 138 experiments

cuuguacuucaguuUGUCUCUCCAAACUAAUUAGUccaaugaacuucugauuacaaaugaguaaccacuaacuucugaguucugauuauggagauauaacuauugcaauuucuuuccaaaguucauugcacUAAUCAGUUUGGGGAGACAAAcugaaaugc
...(((.(((((((((((((((((((((.((((((.((((((((((.........(((.((.(((((........)).))))).))).((((((..................)))))))))))))))).)))))).))))))))))))))))))))).)))

Structure

cuu   c                     A      c          ----------------------cugauuaca   g  u   -  cua 
   gua uucaguuUGUCUCUCCAAACU AUUAGU caaugaacuu                               aau ag aac ca   a
   ||| ||||||||||||||||||||| |||||| ||||||||||                               ||| || ||| ||    
   cgu aagucAAACAGAGGGGUUUGA UAAUca guuacuugaa                               uua uc uug gu   c
---   a                     C      c          accuuucuuuaacguuaucaauauagaggua   g  -   a  cuu 

Annotation confidence High

Genome context

1: 27181872-27182032 [-]

Mature osa-miR2870-5p

• Accession: MIMAT0056138
• Description: Oryza sativa osa-miR2870-5p mature miRNA
• Sequence: 15 - UGUCUCUCCAAACUAAUUAGU - 35
• Evidence: experimental ; unknown

Mature osa-miR2870-3p

• Accession: MIMAT0013817
• Description: Oryza sativa osa-miR2870-3p mature miRNA
• Sequence: 132 - UAAUCAGUUUGGGGAGACAAA - 152
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435