Stem-loop eca-mir-652

Accession

MI0012982

Description

Equus caballus eca-mir-652 precursor miRNA

Literature search

3 open access papers mention eca-mir-652
(8 sentences)

Sequence

93891 reads, 291.0 reads per million, 223 experiments

acgaauggcuaugcacugcACAACCCUAGGAGAGGGUGCCAUUcacauagacuauaauugAAUGGCGCCACUAGGGUUGUGcagugcacaaccuacac
......((...((((((((((((((((((.....(((((((((((..((.....))..))))))))))).))))))))))))))))))...)).....

Structure

acgaau  cua                  GAGAG           ca  g 
      gg   ugcacugcACAACCCUAG     GGUGCCAUUca  ua a
      ||   ||||||||||||||||||     |||||||||||  || c
      cc   acgugacGUGUUGGGAUC     CCGCGGUAAgu  au u
-cacau  aac                  ----A           ua  a 

Annotation confidence High

Genome context

X: 90969671-90969768 [+]

Mature eca-miR-652-5p

• Accession: MIMAT0051498
• Description: Equus caballus eca-miR-652-5p mature miRNA
• Sequence: 20 - ACAACCCUAGGAGAGGGUGCCAUU - 43
• Evidence: not_experimental

Mature eca-miR-652-3p

• Accession: MIMAT0013240
• Description: Equus caballus eca-miR-652-3p mature miRNA
• Sequence: 61 - AAUGGCGCCACUAGGGUUGUG - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131