Stem-loop eca-mir-545

Accession

MI0012981

Description

Equus caballus eca-mir-545 precursor miRNA

Literature search

1 open access papers mention eca-mir-545
(4 sentences)

Sequence

27857 reads, 39.0 reads per million, 143 experiments

cccagccuggcacauuaguaggccUCAGUAAAUGUUUAUUGGAUGAauaaaugaaugacucaUCAACAAACAUUUAUUGUGUGCcugcuaacgugaucuccacagg
.....((((((((.((((((((((.((((((((((((....(((((.............)))))...)))))))))))).).))))))))).))).....).))))

Structure

cccag    - -----   a         - U            AUUG     auaaa 
     ccug g     cac uuaguaggc c CAGUAAAUGUUU    GAUGA     u
     |||| |     ||| ||||||||| | ||||||||||||    |||||     g
     ggac c     gug aaucgucCG G GUUAUUUACAAA    CUacu     a
-----    a cucua   c         U U            -CAA     cagua 

Annotation confidence High

Genome context

X: 58620584-58620689 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-545

Mature eca-miR-545-5p

• Accession: MIMAT0061127
• Description: Equus caballus eca-miR-545-5p mature miRNA
• Sequence: 25 - UCAGUAAAUGUUUAUUGGAUGA - 46
• Evidence: not_experimental

Mature eca-miR-545-3p

• Accession: MIMAT0013239
• Description: Equus caballus eca-miR-545-3p mature miRNA
• Sequence: 63 - UCAACAAACAUUUAUUGUGUGC - 84
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131