Stem-loop eca-mir-500-1

Accession

MI0012968

Description

Equus caballus eca-mir-500-1 precursor miRNA

Literature search

1 open access papers mention eca-mir-500-1
(1 sentences)

Sequence

425388 reads, 879.0 reads per million, 238 experiments

gcucccccucucUAAUCCUUGCUACCUGGGUGAGAguguugucugaaugcaAUGCACCUGGGCAAGGAUUCcgagagcgagagc
((((.(.(((((.(((((((((...(((((((...(((((.....)))))....))))))))))))))))..))))).).))))

Structure

    c c     -U         UAC       -AGA     g 
gcuc c cucuc  AAUCCUUGC   CUGGGUG    guguu u
|||| | |||||  |||||||||   |||||||    ||||| c
cgag g gagag  UUAGGAACG   GGUCCAC    cguaa u
    a c     cC         ---       GUAa     g 

Annotation confidence High

Genome context

X: 41478201-41478284 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from eca-mir-500-1

Mature eca-miR-500-5p

• Accession: MIMAT0013223
• Description: Equus caballus eca-miR-500-5p mature miRNA
• Sequence: 13 - UAAUCCUUGCUACCUGGGUGAGA - 35
• Evidence: not_experimental

Mature eca-miR-500-3p

• Accession: MIMAT0051493
• Description: Equus caballus eca-miR-500-3p mature miRNA
• Sequence: 52 - AUGCACCUGGGCAAGGAUUC - 71
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131