Stem-loop eca-mir-421

Accession

MI0012962

Description

Equus caballus eca-mir-421 precursor miRNA

Sequence

18889 reads, 301.0 reads per million, 198 experiments

cacauuguaggcCUCAUUAAAUGUUUGUUGAAUGaaaaaaugaaucAUCAACAGACAUUAAUUGGGCGCcugcucugug
((((..((((((((((...((((((((((((.(((.........)))))))))))))))...)))).))))))..))))

Structure

    uu      -    UUA            A   aaa 
caca  guaggc CUCA   AAUGUUUGUUGA UGa   a
||||  |||||| ||||   |||||||||||| |||   a
gugu  cgucCG GGGU   UUACAGACAACU Acu   u
    cu      C    UAA            -   aag 

Annotation confidence High

Genome context

X: 58556025-58556103 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-421

Mature eca-miR-421-5p

• Accession: MIMAT0051490
• Description: Equus caballus eca-miR-421-5p mature miRNA
• Sequence: 13 - CUCAUUAAAUGUUUGUUGAAUG - 34
• Evidence: not_experimental

Mature eca-miR-421-3p

• Accession: MIMAT0013216
• Description: Equus caballus eca-miR-421-3p mature miRNA
• Sequence: 47 - AUCAACAGACAUUAAUUGGGCGC - 69
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131