Stem-loop eca-mir-224

Accession

MI0012954

Description

Equus caballus eca-mir-224 precursor miRNA

Literature search

10 open access papers mention eca-mir-224
(13 sentences)

Sequence

2533 reads, 48.0 reads per million, 124 experiments

gggcuuuCAAGUCACUAGUGGUUCCGUUUAGuagaugguugugcauuguuucaAAAUGGUGCCCUAGUGACUACAaagccc
(((((((..(((((((((.(((.((((((.(..((((......))))....).)))))).))))))))))))..)))))))

Structure

       CA         U   U      A --ua    gu 
gggcuuu  AGUCACUAG GGU CCGUUU G    gaug  u
|||||||  ||||||||| ||| |||||| |    ||||   
cccgaaA  UCAGUGAUC CCG GGUAAA c    uuac  g
       CA         -   U      a uuug    gu 

Annotation confidence High

Genome context

X: 124794220-124794300 [-]

Mature eca-miR-224-5p

• Accession: MIMAT0013206
• Description: Equus caballus eca-miR-224-5p mature miRNA
• Sequence: 8 - CAAGUCACUAGUGGUUCCGUUUAG - 31
• Evidence: experimental ; Illumina [1]

Mature eca-miR-224-3p

• Accession: MIMAT0051486
• Description: Equus caballus eca-miR-224-3p mature miRNA
• Sequence: 54 - AAAUGGUGCCCUAGUGACUACA - 75
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131