Stem-loop eca-mir-223

Accession

MI0012953

Description

Equus caballus eca-mir-223 precursor miRNA

Literature search

4 open access papers mention eca-mir-223
(8 sentences)

Sequence

87 reads, 13 reads per million, 1 experiments

gcccagccuccugcagugccacgcuccguguauuugacaagcugaguuggacacuccaugugguagagUGUCAGUUUGUCAAAUACCCCAagugcggcacaugc
............((((((((.((((..(.((((((((((((((......(((((((.........))))))))))))))))))))).)..)))).))))).)))

Structure

gcccagccuccu   -     a    cc u              gaguug       cau 
            gca gugcc cgcu  g guauuugacaagcu      gacacuc   g
            ||| ||||| ||||  | ||||||||||||||      |||||||   u
            cgu cacgg guga  C CAUAAACUGUUUGA      CUGUgag   g
------------   a     c    AC C              ------       aug 

Annotation confidence Not enough data

Genome context

chrX: 48492588-48492691 [+]

Mature eca-miR-223

• Accession: MIMAT0013205
• Description: Equus caballus eca-miR-223 mature miRNA
• Sequence: 69 - UGUCAGUUUGUCAAAUACCCCA - 90
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131