miRBase entry: eca-mir-221

Stem-loop eca-mir-221


Accession
MI0012951
Description
Equus caballus eca-mir-221 precursor miRNA

Literature search
4 open access papers mention eca-mir-221
(8 sentences)

Sequence

624 reads, 94 reads per million, 1 experiments
ccaacauccaggucuggggcaugaaccuggcauacaauguagauuucuguguuucuugggcaacAGCUACAUUGUCUGCUGGGUUUCaggcuaccuggaaacauguucuc
..(((((((((((....(((.(((((((((((.(((((((((....((((((((...)))).))))))))))))).))))))).)))).))))))))))....))))...

Structure
-cc    ----       cugg   a    -       u         auuu    -    c 
   aaca    uccaggu    ggc ugaa ccuggca acaauguag    cugu guuu  
   ||||    |||||||    ||| |||| ||||||| |||||||||    |||| |||| u
   uugu    aggucca    ucg aCUU GGGUCGU UGUUACAUC    GAca cggg  
cuc    acaa       ----   g    U       C         ----    a    u 


Annotation confidence High
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Genome context
chrX: 37090647-37090756 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-221
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-221

Accession MIMAT0013203
Description Equus caballus eca-miR-221 mature miRNA
Sequence 65 - AGCUACAUUGUCUGCUGGGUUUC - 87
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131